Index A | B | C | D | E | F | G | I | K | L | M | N | O | P | R | S | T | V | Z A apply() (synthbold.base.Transform static method) (synthbold.transforms.BiasField static method) (synthbold.transforms.CaliberDeformation static method) (synthbold.transforms.ComplexGaussianNoise static method) (synthbold.transforms.ElasticDeformation static method) (synthbold.transforms.GammaTransform static method) (synthbold.transforms.GaussianNoise static method) (synthbold.transforms.GaussianSharpening static method) (synthbold.transforms.GaussianSmoothing static method) (synthbold.transforms.GibbsRinging static method) (synthbold.transforms.KSpaceSpikeNoise static method) (synthbold.transforms.MultiplicativeGammaNoise static method) (synthbold.transforms.NoncentralChiNoise static method) (synthbold.transforms.PerlinNoise static method) (synthbold.transforms.PoissonNoise static method) (synthbold.transforms.RandomFlip static method) (synthbold.transforms.RicianNoise static method) (synthbold.transforms.SpeckleNoise static method) (synthbold.transforms.SphericalMask static method) apply_deformation() (in module synthbold.transforms.functional) attrs (synthbold.base.BaseGeometry property) (synthbold.base.Model property) (synthbold.base.ObjectGeometry property) (synthbold.geometries.CylinderTrees property) (synthbold.geometries.Shapes property) (synthbold.geometries.SplineVessels property) (synthbold.geometries.Toroids property) (synthbold.models.SignalModel property) (synthbold.pipeline.SynthPipeline property) B background_mu (synthbold.config.PhysioParams attribute) background_std (synthbold.config.PhysioParams attribute) BackgroundModel (class in synthbold.models) BaseGeometry (class in synthbold.base) benchmark() (synthbold.pipeline.SynthPipeline method) BiasField (class in synthbold.transforms) C CaliberDeformation (class in synthbold.transforms) check_divisible_output() (synthbold.config.GeometryParams class method) check_range() (synthbold.config.Range class method) chi (synthbold.pipeline.SynthParams attribute) ComplexGaussianNoise (class in synthbold.transforms) Config (class in synthbold.config) cube_allow_overlap (synthbold.config.GeometryParams attribute) cube_diameter (synthbold.config.GeometryParams attribute) cube_num (synthbold.config.GeometryParams attribute) cube_vf (synthbold.config.GeometryParams attribute) Cubes (class in synthbold.geometries) cubes_zarr (synthbold.pipeline.SynthPipeline property) cylinder_allow_overlap (synthbold.config.GeometryParams attribute) cylinder_diameter (synthbold.config.GeometryParams attribute) cylinder_num (synthbold.config.GeometryParams attribute) cylinder_vf (synthbold.config.GeometryParams attribute) Cylinders (class in synthbold.geometries) cylinders_zarr (synthbold.pipeline.SynthPipeline property) CylinderTrees (class in synthbold.geometries) D dbz_kurtosis (synthbold.pipeline.SynthSample attribute) dbz_mean (synthbold.pipeline.SynthSample attribute) dbz_skewness (synthbold.pipeline.SynthSample attribute) dbz_variance (synthbold.pipeline.SynthSample attribute) dchi_to_dbz() (in module synthbold.models.functional) DeformedSphericalMask (class in synthbold.transforms) device (synthbold.config.Config attribute) DistractorModel (class in synthbold.models) dtype (synthbold.base.BaseGeometry attribute) E ElasticDeformation (class in synthbold.transforms) F ForegroundModel (class in synthbold.models) forward() (synthbold.base.BaseGeometry method) (synthbold.base.Model method) (synthbold.base.ObjectGeometry method) (synthbold.base.Transform method) (synthbold.geometries.Shapes method) (synthbold.geometries.SplineVessels method) (synthbold.models.BackgroundModel method) (synthbold.models.ForegroundModel method) (synthbold.models.PerturbationModel method) (synthbold.models.SignalModel method) fov (synthbold.config.GeometryParams attribute) from_config() (synthbold.base.BaseGeometry class method) (synthbold.base.Transform class method) (synthbold.geometries.Cubes class method) (synthbold.geometries.Cylinders class method) (synthbold.geometries.CylinderTrees class method) (synthbold.geometries.Shapes class method) (synthbold.geometries.Spheres class method) (synthbold.geometries.SplineVessels class method) (synthbold.geometries.Tetrahedra class method) (synthbold.geometries.Toroids class method) (synthbold.models.BackgroundModel class method) (synthbold.models.DistractorModel class method) (synthbold.models.ForegroundModel class method) (synthbold.models.PerturbationModel class method) (synthbold.models.SignalModel class method) (synthbold.transforms.BiasField class method) (synthbold.transforms.CaliberDeformation class method) (synthbold.transforms.ComplexGaussianNoise class method) (synthbold.transforms.DeformedSphericalMask class method) (synthbold.transforms.ElasticDeformation class method) (synthbold.transforms.GammaTransform class method) (synthbold.transforms.GaussianNoise class method) (synthbold.transforms.GaussianSharpening class method) (synthbold.transforms.GaussianSmoothing class method) (synthbold.transforms.GibbsRinging class method) (synthbold.transforms.KSpaceSpikeNoise class method) (synthbold.transforms.MultiplicativeGammaNoise class method) (synthbold.transforms.NoncentralChiNoise class method) (synthbold.transforms.PerlinNoise class method) (synthbold.transforms.PoissonNoise class method) (synthbold.transforms.RandomFlip class method) (synthbold.transforms.RicianNoise class method) (synthbold.transforms.SpeckleNoise class method) (synthbold.transforms.SphericalMask class method) from_dict() (synthbold.config.Config class method) from_yaml() (synthbold.config.Config class method) G GammaTransform (class in synthbold.transforms) GaussianNoise (class in synthbold.transforms) GaussianSharpening (class in synthbold.transforms) GaussianSmoothing (class in synthbold.transforms) geom (synthbold.config.Config attribute) GeometryParams (class in synthbold.config) GibbsRinging (class in synthbold.transforms) I input_shape (synthbold.config.GeometryParams attribute) K KSpaceSpikeNoise (class in synthbold.transforms) L label_displacement_shape (synthbold.config.PhysioParams attribute) label_J (synthbold.config.PhysioParams attribute) label_scale (synthbold.config.PhysioParams attribute) labels_to_values() (in module synthbold.models.functional) load_nifti() (in module synthbold.io) load_zarr() (in module synthbold.io) log_call() (in module synthbold.decorator) LogNormalRange (class in synthbold.config) M magnitude (synthbold.pipeline.SynthSample attribute) make_gif() (in module synthbold.visualize) max (synthbold.config.Range attribute) mean (synthbold.config.LogNormalRange attribute) merge_labels() (in module synthbold.models.functional) min (synthbold.config.Range attribute) Model (class in synthbold.base) model_config (synthbold.config.Config attribute) (synthbold.config.GeometryParams attribute) (synthbold.config.LogNormalRange attribute) (synthbold.config.PhysioParams attribute) (synthbold.config.Range attribute) module synthbold.base synthbold.config synthbold.decorator synthbold.geometries synthbold.io synthbold.models synthbold.models.functional synthbold.pipeline synthbold.sampling synthbold.transforms synthbold.transforms.functional synthbold.visualize MultiplicativeGammaNoise (class in synthbold.transforms) N NoncentralChiNoise (class in synthbold.transforms) normalized_grid (synthbold.base.BaseGeometry property) O ObjectGeometry (class in synthbold.base) output_shape (synthbold.config.GeometryParams attribute) P padding (synthbold.config.GeometryParams attribute) percentile_scale() (in module synthbold.transforms.functional) PerlinNoise (class in synthbold.transforms) PerturbationModel (class in synthbold.models) phase (synthbold.pipeline.SynthSample attribute) phi (synthbold.pipeline.SynthParams attribute) physics (synthbold.config.Config attribute) physio (synthbold.config.Config attribute) PhysioParams (class in synthbold.config) Pipeline (class in synthbold.transforms.functional) PoissonNoise (class in synthbold.transforms) psc() (in module synthbold.transforms.functional) R RandomFlip (class in synthbold.transforms) RandomGeneratorMixin (class in synthbold.base) Range (class in synthbold.config) render_3d() (in module synthbold.visualize) RicianNoise (class in synthbold.transforms) S sample() (synthbold.base.Transform method) (synthbold.transforms.BiasField method) (synthbold.transforms.CaliberDeformation method) (synthbold.transforms.ComplexGaussianNoise method) (synthbold.transforms.DeformedSphericalMask method) (synthbold.transforms.ElasticDeformation method) (synthbold.transforms.GammaTransform method) (synthbold.transforms.GaussianNoise method) (synthbold.transforms.GaussianSharpening method) (synthbold.transforms.GaussianSmoothing method) (synthbold.transforms.GibbsRinging method) (synthbold.transforms.KSpaceSpikeNoise method) (synthbold.transforms.MultiplicativeGammaNoise method) (synthbold.transforms.NoncentralChiNoise method) (synthbold.transforms.PerlinNoise method) (synthbold.transforms.PoissonNoise method) (synthbold.transforms.RandomFlip method) (synthbold.transforms.RicianNoise method) (synthbold.transforms.SpeckleNoise method) (synthbold.transforms.SphericalMask method) sample_1d() (in module synthbold.sampling) sample_fractal_noise() (in module synthbold.transforms.functional) sample_log_uniform() (in module synthbold.sampling) sample_lowres_noise() (in module synthbold.transforms.functional) sample_polar() (in module synthbold.sampling) sample_uniform() (in module synthbold.sampling) save() (synthbold.config.Config method) save_batch() (in module synthbold.io) save_mesh() (in module synthbold.io) save_nifti() (in module synthbold.io) save_zarr() (in module synthbold.io) seed (synthbold.config.Config attribute) Shapes (class in synthbold.geometries) shapes_zarr (synthbold.pipeline.SynthPipeline property) SignalModel (class in synthbold.models) SpeckleNoise (class in synthbold.transforms) sphere_allow_overlap (synthbold.config.GeometryParams attribute) sphere_diameter (synthbold.config.GeometryParams attribute) sphere_num (synthbold.config.GeometryParams attribute) sphere_vf (synthbold.config.GeometryParams attribute) Spheres (class in synthbold.geometries) spheres_zarr (synthbold.pipeline.SynthPipeline property) spherical_to_cartesian() (in module synthbold.models.functional) SphericalMask (class in synthbold.transforms) spline_nb_children (synthbold.config.GeometryParams attribute) spline_nb_levels (synthbold.config.GeometryParams attribute) spline_radius (synthbold.config.GeometryParams attribute) spline_radius_change (synthbold.config.GeometryParams attribute) spline_radius_ratio (synthbold.config.GeometryParams attribute) spline_tortuosity (synthbold.config.GeometryParams attribute) spline_tree_density (synthbold.config.GeometryParams attribute) SplineVessels (class in synthbold.geometries) std (synthbold.config.LogNormalRange attribute) synthbold.base module synthbold.config module synthbold.decorator module synthbold.geometries module synthbold.io module synthbold.models module synthbold.models.functional module synthbold.pipeline module synthbold.sampling module synthbold.transforms module synthbold.transforms.functional module synthbold.visualize module SynthParams (class in synthbold.pipeline) SynthPipeline (class in synthbold.pipeline) SynthSample (class in synthbold.pipeline) T t2 (synthbold.pipeline.SynthParams attribute) te (synthbold.pipeline.SynthParams attribute) Tetrahedra (class in synthbold.geometries) tetrahedra_zarr (synthbold.pipeline.SynthPipeline property) tetrahedron_allow_overlap (synthbold.config.GeometryParams attribute) tetrahedron_diameter (synthbold.config.GeometryParams attribute) tetrahedron_num (synthbold.config.GeometryParams attribute) tetrahedron_vf (synthbold.config.GeometryParams attribute) theta (synthbold.pipeline.SynthParams attribute) tissue (synthbold.pipeline.SynthSample attribute) to_device() (in module synthbold.decorator) toroid_allow_overlap (synthbold.config.GeometryParams attribute) toroid_diameter (synthbold.config.GeometryParams attribute) toroid_num (synthbold.config.GeometryParams attribute) toroid_tube_ratio (synthbold.config.GeometryParams attribute) toroid_vf (synthbold.config.GeometryParams attribute) Toroids (class in synthbold.geometries) toroids_zarr (synthbold.pipeline.SynthPipeline property) Transform (class in synthbold.base) transform (synthbold.config.Config attribute) transform_prob (synthbold.config.Config attribute) tree_allow_overlap (synthbold.config.GeometryParams attribute) tree_branch_angle (synthbold.config.GeometryParams attribute) tree_branch_prob (synthbold.config.GeometryParams attribute) tree_diameter (synthbold.config.GeometryParams attribute) tree_max_depth (synthbold.config.GeometryParams attribute) tree_min_radius_fraction (synthbold.config.GeometryParams attribute) tree_num (synthbold.config.GeometryParams attribute) tree_segment_length (synthbold.config.GeometryParams attribute) tree_vf (synthbold.config.GeometryParams attribute) V vf (synthbold.pipeline.SynthSample attribute) voxel_grid (synthbold.base.BaseGeometry property) Z zarr_attributes() (in module synthbold.io) zscore() (in module synthbold.transforms.functional)